AbstractPermutations.h

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#ifndef INCLUDE_MOLASSEMBLER_STEREOPERMUTATIONS_ABSTRACT_PERMUTATIONS_H
#define INCLUDE_MOLASSEMBLER_STEREOPERMUTATIONS_ABSTRACT_PERMUTATIONS_H

#include "Molassembler/Stereopermutators/ShapeVertexMaps.h"
#include "Molassembler/Stereopermutation/Manipulation.h"

namespace Scine {
namespace Molassembler {

namespace Stereopermutators {

struct Abstract {

  static RankingInformation::RankedSitesType canonicalize(
    RankingInformation::RankedSitesType rankedSites
  );

  static Stereopermutations::Stereopermutation::Occupation transferToOccupation(
    const RankingInformation::RankedSitesType& canonicalSites
  );

  static Stereopermutations::Stereopermutation::OrderedLinks selfReferentialTransform(
    const std::vector<RankingInformation::Link>& rankingLinks,
    const RankingInformation::RankedSitesType& canonicalSites
  );

  static Stereopermutations::Stereopermutation::Occupation makeOccupation(
    const RankingInformation::RankedSitesType& canonicalSites,
    const Stereopermutations::Stereopermutation::Occupation& canonicalOccupation,
    const Temple::StrongIndexPermutation<Shapes::Vertex, SiteIndex>& sitesAtShapeVertices
  );

  Abstract() = default;

  Abstract(
    const RankingInformation& ranking,
    Shapes::Shape shape
  );

  RankingInformation::RankedSitesType canonicalSites;

  Stereopermutations::Stereopermutation::Occupation occupation;

  Stereopermutations::Stereopermutation::OrderedLinks selfReferentialLinks;

  Stereopermutations::Uniques permutations;
};

} // namespace Stereopermutators
} // namespace Molassembler
} // namespace Scine


#endif