MetricMatrix.h

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#ifndef INCLUDE_MOLASSEMBLER_DISTANCE_GEOMETRY_METRIC_MATRIX_H
#define INCLUDE_MOLASSEMBLER_DISTANCE_GEOMETRY_METRIC_MATRIX_H

#include <Eigen/Core>

#include "Molassembler/DistanceGeometry/DistanceGeometry.h"

namespace Scine {
namespace Molassembler {
namespace DistanceGeometry {

class MetricMatrix {
public:
/* Constructors */
  MetricMatrix() = delete;
  explicit MetricMatrix(Eigen::MatrixXd distanceMatrix);

/* Information */
  const Eigen::MatrixXd& access() const;

  Eigen::MatrixXd embed() const;

  Eigen::MatrixXd embedWithFullDiagonalization() const;

/* Operators */
  bool operator == (const MetricMatrix& other) const;

private:
/* Underlying matrix representation */
  Eigen::MatrixXd matrix_;

  void constructFromTemporary_(Eigen::MatrixXd&& distances);
};

} // namespace DistanceGeometry
} // namespace Molassembler
} // namespace Scine

#endif