ShapeVertexMaps.h

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#ifndef INCLUDE_MOLASSEMBLER_STEREOPERMUTATORS_SHAPE_VERTEX_MAPS_H
#define INCLUDE_MOLASSEMBLER_STEREOPERMUTATORS_SHAPE_VERTEX_MAPS_H

#include "Molassembler/RankingInformation.h"

#include "Molassembler/Temple/StrongIndexPermutation.h"
#include "Molassembler/Shapes/Data.h"

namespace Scine {
namespace Molassembler {
namespace Stereopermutations {
class Stereopermutation;
} // namespace Stereopermutations

using SiteToShapeVertexMap = Temple::StrongIndexPermutation<SiteIndex, Shapes::Vertex>;

SiteToShapeVertexMap siteToShapeVertexMap(
  const Stereopermutations::Stereopermutation& stereopermutation,
  const RankingInformation::RankedSitesType& canonicalSites,
  const std::vector<RankingInformation::Link>& siteLinks,
  std::vector<std::vector<SiteIndex>> siteGroups = {},
  std::vector<std::vector<Shapes::Vertex>> vertexGroups = {}
);

Temple::StrongIndexPermutation<Shapes::Vertex, SiteIndex> shapeVertexToSiteIndexMap(
  const Stereopermutations::Stereopermutation& stereopermutation,
  const RankingInformation::RankedSitesType& canonicalSites,
  const std::vector<RankingInformation::Link>& siteLinks
);

Stereopermutations::Stereopermutation stereopermutationFromSiteToShapeVertexMap(
  const SiteToShapeVertexMap& siteToShapeVertexMap,
  const std::vector<RankingInformation::Link>& links,
  const RankingInformation::RankedSitesType& canonicalSites
);

} // namespace Molassembler
} // namespace Scine

#endif