| addAngle(int a1, int a2, int a3) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| addBond(int a1, int a2) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| addDihedral(int a1, int a2, int a3, int a4) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| addExcludedNonBonded(int a1, int a2) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| addHydrogenBond(int a1, int a2, int a3) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| addImproperDihedral(int central, int a2, int a3, int a4) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| addScaledNonBonded(int a1, int a2) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| clearHydrogenBonds() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getAngleContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getAngleContainer() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getBondContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getBondContainer() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getDihedralContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getDihedralContainer() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getExcludedNonBondedContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getHydrogenBondContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getImproperDihedralContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getImproperDihedralContainer() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
| getScaledNonBondedContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |