addAngle(int a1, int a2, int a3) | Scine::MolecularMechanics::IndexedStructuralTopology | |
addBond(int a1, int a2) | Scine::MolecularMechanics::IndexedStructuralTopology | |
addDihedral(int a1, int a2, int a3, int a4) | Scine::MolecularMechanics::IndexedStructuralTopology | |
addExcludedNonBonded(int a1, int a2) | Scine::MolecularMechanics::IndexedStructuralTopology | |
addHydrogenBond(int a1, int a2, int a3) | Scine::MolecularMechanics::IndexedStructuralTopology | |
addImproperDihedral(int central, int a2, int a3, int a4) | Scine::MolecularMechanics::IndexedStructuralTopology | |
addScaledNonBonded(int a1, int a2) | Scine::MolecularMechanics::IndexedStructuralTopology | |
clearHydrogenBonds() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getAngleContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getAngleContainer() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getBondContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getBondContainer() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getDihedralContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getDihedralContainer() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getExcludedNonBondedContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getHydrogenBondContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getImproperDihedralContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getImproperDihedralContainer() (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |
getScaledNonBondedContainer() const (defined in Scine::MolecularMechanics::IndexedStructuralTopology) | Scine::MolecularMechanics::IndexedStructuralTopology | |