.. vizchemoton master file

VizChemoton
=================================

VizChemoton allows the **visualization of chemical reaction networks (CRNs)** constructed by `Chemoton <https://github.com/qcscine/chemoton>`_
through the generation of standalone HTML files with `amk-tools <https://github.com/dgarayr/amk_tools>`_, allowing the user to easily interact
with the network **just via browser**.

.. note::

   If you use VizChemoton, please cite it as follows:
   
   Enric Petrus, Diego Garay-Ruiz, Carles Bo, Markus Reiher, Thomas B. Hofstetter. VizChemoton 1.0.0, Zenodo (2025)  
   DOI: `10.5281/zenodo.14803803 <https://doi.org/10.5281/zenodo.14803803>`_

.. image:: ../example_crn_html.png
   :alt: Example Image

*The image above shows which type of visualization (network on the left, structure on
the right) the HTML file permits*

Below we depict the table of contents of this documentation. 

.. toctree::
   :maxdepth: 3

   readme
   inst
   inputfile
   examples
   changelog