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Scine::Kinetx
3.0.0
Kinetic models for reaction networks.
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| Numerical integration according to the cash-karp-5 algorithm. This algorithm automatically generates the time step. (Ref. https://arxiv.org/pdf/1309.2710.pdf, https://doi.org/10.1016/j.jcp.2013.09.025) | |
| Sundials implementation called CVODE | |
| Euler-type integration (dt * dy/dt) | |
| Implicit Euler-type integration algorithm (y_k+1 = dt f(t_k+1, y_k+1)), where f(t_k+1, y_k+1) is the reaction rate and k the integration step. Requires the Jacobian of the reaction system | |
| Base class for all Runge-Kutta methods/implementations | |
| Base class for all Runge-Kutta methods/implementations | |
| A class allowing for easier building of reaction networks | |
| A factory class for test networks | |