#include "ProtonationHandler.h"
#include "../SpecialCaseHandler.h"
#include "../StructurePreparationHelper.h"
#include "../StructurePreparationIO.h"
#include "../StructurePreparationSettings.h"
#include "ProtonationHelper.h"
#include <Molassembler/Graph.h>
#include <Molassembler/Interpret.h>
#include <Swoose/Utilities/TopologyUtils.h>
#include <Utils/Bonds/BondDetector.h>
#include <Utils/Geometry/Atom.h>
#include <Utils/Geometry/AtomCollection.h>
#include <Utils/Geometry/ElementInfo.h>
#include <Utils/Geometry/StructuralCompletion.h>
#include <Utils/IO/ChemicalFileFormats/ChemicalFileHandler.h>
#include <Utils/IO/ChemicalFileFormats/OpenBabelStreamHandler.h>
#include <Utils/IO/NativeFilenames.h>
#include <Eigen/Core>
#include <boost/filesystem.hpp>
#include <boost/process.hpp>

Include dependency graph for ProtonationHandler.cpp:

Detailed Description

Copyright: This code is licensed under the 3-clause BSD license.
Copyright ETH Zurich, Department of Chemistry and Applied Biosciences, Reiher Group.
See LICENSE.txt for details.