Here is a list of all documented class members with links to the class documentation for each member:
- s -
- sanityCheck()
: Scine::MolecularMechanics::SfamParameters
- ScaledInteractions()
: Scine::MolecularMechanics::ScaledInteractions
- setAngleTerms()
: Scine::MolecularMechanics::AnglesEvaluator
- setAtomType()
: Scine::MolecularMechanics::GaffAtomTypeIdentifier
, Scine::MolecularMechanics::SfamAtomTypeIdentifier
- setAtomTypesHolder()
: Scine::MolecularMechanics::LennardJonesEvaluator
- setBetaRepulsion()
: Scine::MolecularMechanics::RepulsionEvaluator
- setBondTerms()
: Scine::MolecularMechanics::BondsEvaluator
- setC6()
: Scine::MolecularMechanics::SfamParameters
- setCosinePreFactor()
: Scine::MolecularMechanics::Dihedral
- setCutOffRadius()
: Scine::MolecularMechanics::ElectrostaticEvaluator
, Scine::MolecularMechanics::LennardJonesEvaluator
- setD3Parameters()
: Scine::MolecularMechanics::DispersionEvaluator
- setDihedralTerms()
: Scine::MolecularMechanics::DihedralsEvaluator
- setDispersionTerms()
: Scine::MolecularMechanics::DispersionEvaluator
- setEquilibriumAngle()
: Scine::MolecularMechanics::AngleParameters
, Scine::MolecularMechanics::ImproperDihedralParameters
- setEquilibriumBondLength()
: Scine::MolecularMechanics::BondParameters
- setExclusions()
: Scine::MolecularMechanics::InteractionExclusion
- setForceConstant()
: Scine::MolecularMechanics::AngleParameters
, Scine::MolecularMechanics::BondParameters
, Scine::MolecularMechanics::ImproperDihedralParameters
- setHalfBarrierHeight()
: Scine::MolecularMechanics::DihedralParameters
- setHydrogenBondTerms()
: Scine::MolecularMechanics::HydrogenBondEvaluator
- setImproperDihedralTerms()
: Scine::MolecularMechanics::ImproperDihedralsEvaluator
- setInitialParameters()
: Scine::MMParametrization::UpdateFunctionManager
- setInteractionScalingFactor()
: Scine::MolecularMechanics::ScaledInteractions
- setNonCovalentParameters()
: Scine::MolecularMechanics::SfamParameters
- setParameters()
: Scine::MolecularMechanics::LennardJonesEvaluator
- setPeriodicity()
: Scine::MolecularMechanics::DihedralParameters
- setPhaseShift()
: Scine::MolecularMechanics::DihedralParameters
- setProteinStructure()
: Scine::StructurePreparation::ProtonationHandler
- setReferenceData()
: Scine::Swoose::MachineLearning::MolecularMachineLearningModel
- setRepulsionTerms()
: Scine::MolecularMechanics::RepulsionEvaluator
- setRequiredProperties()
: Scine::MolecularMechanics::MolecularMechanicsCalculator
, Scine::Qmmm::QmmmCalculator
, Scine::Swoose::MockQmCalculator
- setScaledInteractionPairs()
: Scine::MolecularMechanics::ScaledInteractions
- setScalingFactor()
: Scine::MolecularMechanics::ElectrostaticEvaluator
- setStructure()
: Scine::Qmmm::QmmmCalculator
, Scine::MolecularMechanics::GaffMolecularMechanicsCalculator
, Scine::MolecularMechanics::SfamMolecularMechanicsCalculator
, Scine::Swoose::MockQmCalculator
- settings()
: Scine::MolecularMechanics::MolecularMechanicsCalculator
, Scine::MMParametrization::Parametrizer
, Scine::MolecularMechanics::MolecularMechanicsCalculator
, Scine::Qmmm::QmmmCalculator
, Scine::Swoose::MockQmCalculator
, Scine::Qmmm::QmRegionSelector
, Scine::StructurePreparation::StructureProcessor
, Scine::Swoose::MockQmCalculator
, Scine::Qmmm::QmRegionSelector
- SettingsPopulator()
: Scine::SwooseUtilities::SettingsPopulator
- setUnderlyingCalculator()
: Scine::Qmmm::QmRegionSelector
- setUnderlyingCalculators()
: Scine::Qmmm::QmmmCalculator
- SfamAtomTypeIdentifier()
: Scine::MolecularMechanics::SfamAtomTypeIdentifier
- SfamCalculatorSettings()
: Scine::MolecularMechanics::SfamCalculatorSettings
- SfamMolecularMechanicsCalculator()
: Scine::MolecularMechanics::SfamMolecularMechanicsCalculator
- SfamParameterParser()
: Scine::MolecularMechanics::SfamParameterParser
- SfamPotentialTermsGenerator()
: Scine::MolecularMechanics::SfamPotentialTermsGenerator
- siteIspHSensitive
: Scine::MMParametrization::ParametrizationData
- sites
: Scine::MMParametrization::TitrationResults
- size()
: Scine::MolecularMechanics::AtomTypesHolder
- StructurePreparationSettings()
: Scine::StructurePreparation::StructurePreparationSettings
- StructureProcessor()
: Scine::StructurePreparation::StructureProcessor
- SubsystemGenerator()
: Scine::SwooseUtilities::SubsystemGenerator
- subsystemMapping
: Scine::StructurePreparation::StructurePreparationData
- superfluousFragments
: Scine::MMParametrization::ParametrizationData
- supportsMethodFamily()
: Scine::Swoose::MockQmCalculator
, Scine::Qmmm::QmmmCalculator
, Scine::MolecularMechanics::MolecularMechanicsCalculator
- symmetryScores
: Scine::Qmmm::QmmmData
- systemFile
: Scine::StructurePreparation::StructurePreparationFiles