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• addAngle() : Scine::MolecularMechanics::MMParameters , Scine::MolecularMechanics::IndexedStructuralTopology
• addBond() : Scine::MolecularMechanics::IndexedStructuralTopology , Scine::MolecularMechanics::MMParameters
• addDihedral() : Scine::MolecularMechanics::IndexedStructuralTopology
• addExcludedNonBonded() : Scine::MolecularMechanics::IndexedStructuralTopology
• addExclusions() : Scine::MolecularMechanics::InteractionExclusion
• addExternalSettings() : Scine::Qmmm::QmmmCalculatorSettings
• addHydrogenBond() : Scine::MolecularMechanics::IndexedStructuralTopology
• addHydrogenBondsToIndexedStructuralTopology() : Scine::MolecularMechanics::IndexedStructuralTopologyCreator
• addImproperDihedral() : Scine::MolecularMechanics::IndexedStructuralTopology
• addScaledInteractionPairs() : Scine::MolecularMechanics::ScaledInteractions
• addScaledNonBonded() : Scine::MolecularMechanics::IndexedStructuralTopology
• addUnderlyingSettings() : Scine::Qmmm::QmmmCalculator
• allowsPythonGILRelease() : Scine::MolecularMechanics::MolecularMechanicsCalculator , Scine::Qmmm::QmmmCalculator , Scine::Swoose::MockQmCalculator , Scine::Qmmm::QmRegionSelector
• analyzeFragment() : Scine::SwooseUtilities::FragmentAnalyzer
• analyzeStructure() : Scine::StructurePreparation::StructureProcessor
• Angle() : Scine::MolecularMechanics::Angle
• AngleParameters() : Scine::MolecularMechanics::AngleParameters
• AnglesEvaluator() : Scine::MolecularMechanics::AnglesEvaluator
• AngleTerm() : Scine::MolecularMechanics::AngleTerm
• assembleFullHessian() : Scine::MMParametrization::FullHessianAssembler
• atomicCharges() : Scine::MolecularMechanics::MolecularMechanicsCalculator
• AtomicInformationReader() : Scine::SwooseUtilities::AtomicInformationReader
• AtomTypesHolder() : Scine::MolecularMechanics::AtomTypesHolder