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• sanityCheck() : Scine::MolecularMechanics::SfamParameters
• ScaledInteractions() : Scine::MolecularMechanics::ScaledInteractions
• setAngleTerms() : Scine::MolecularMechanics::AnglesEvaluator
• setAtomType() : Scine::MolecularMechanics::GaffAtomTypeIdentifier , Scine::MolecularMechanics::SfamAtomTypeIdentifier
• setAtomTypesHolder() : Scine::MolecularMechanics::LennardJonesEvaluator
• setBetaRepulsion() : Scine::MolecularMechanics::RepulsionEvaluator
• setBondTerms() : Scine::MolecularMechanics::BondsEvaluator
• setC6() : Scine::MolecularMechanics::SfamParameters
• setCosinePreFactor() : Scine::MolecularMechanics::Dihedral
• setCutOffRadius() : Scine::MolecularMechanics::ElectrostaticEvaluator , Scine::MolecularMechanics::LennardJonesEvaluator
• setD3Parameters() : Scine::MolecularMechanics::DispersionEvaluator
• setDihedralTerms() : Scine::MolecularMechanics::DihedralsEvaluator
• setDispersionTerms() : Scine::MolecularMechanics::DispersionEvaluator
• setEquilibriumAngle() : Scine::MolecularMechanics::AngleParameters , Scine::MolecularMechanics::ImproperDihedralParameters
• setEquilibriumBondLength() : Scine::MolecularMechanics::BondParameters
• setExclusions() : Scine::MolecularMechanics::InteractionExclusion
• setForceConstant() : Scine::MolecularMechanics::AngleParameters , Scine::MolecularMechanics::BondParameters , Scine::MolecularMechanics::ImproperDihedralParameters
• setHalfBarrierHeight() : Scine::MolecularMechanics::DihedralParameters
• setHydrogenBondTerms() : Scine::MolecularMechanics::HydrogenBondEvaluator
• setImproperDihedralTerms() : Scine::MolecularMechanics::ImproperDihedralsEvaluator
• setInitialParameters() : Scine::MMParametrization::UpdateFunctionManager
• setInteractionScalingFactor() : Scine::MolecularMechanics::ScaledInteractions
• setNonCovalentParameters() : Scine::MolecularMechanics::SfamParameters
• setParameters() : Scine::MolecularMechanics::LennardJonesEvaluator
• setPeriodicity() : Scine::MolecularMechanics::DihedralParameters
• setPhaseShift() : Scine::MolecularMechanics::DihedralParameters
• setProteinStructure() : Scine::StructurePreparation::ProtonationHandler
• setReferenceData() : Scine::Swoose::MachineLearning::MolecularMachineLearningModel
• setRepulsionTerms() : Scine::MolecularMechanics::RepulsionEvaluator
• setRequiredProperties() : Scine::MolecularMechanics::MolecularMechanicsCalculator , Scine::Qmmm::QmmmCalculator , Scine::Swoose::MockQmCalculator
• setScaledInteractionPairs() : Scine::MolecularMechanics::ScaledInteractions
• setScalingFactor() : Scine::MolecularMechanics::ElectrostaticEvaluator
• setStructure() : Scine::MolecularMechanics::GaffMolecularMechanicsCalculator , Scine::MolecularMechanics::SfamMolecularMechanicsCalculator , Scine::Swoose::MockQmCalculator , Scine::Qmmm::QmmmCalculator
• settings() : Scine::MMParametrization::Parametrizer , Scine::Qmmm::QmRegionSelector , Scine::Swoose::MockQmCalculator , Scine::StructurePreparation::StructureProcessor , Scine::MolecularMechanics::MolecularMechanicsCalculator , Scine::Qmmm::QmmmCalculator , Scine::Qmmm::QmRegionSelector , Scine::MolecularMechanics::MolecularMechanicsCalculator , Scine::Swoose::MockQmCalculator , Scine::MMParametrization::Parametrizer
• SettingsPopulator() : Scine::SwooseUtilities::SettingsPopulator
• setUnderlyingCalculator() : Scine::Qmmm::QmRegionSelector
• setUnderlyingCalculators() : Scine::Qmmm::QmmmCalculator
• SfamAtomTypeIdentifier() : Scine::MolecularMechanics::SfamAtomTypeIdentifier
• SfamCalculatorSettings() : Scine::MolecularMechanics::SfamCalculatorSettings
• SfamMolecularMechanicsCalculator() : Scine::MolecularMechanics::SfamMolecularMechanicsCalculator
• SfamParameterParser() : Scine::MolecularMechanics::SfamParameterParser
• SfamPotentialTermsGenerator() : Scine::MolecularMechanics::SfamPotentialTermsGenerator
• size() : Scine::MolecularMechanics::AtomTypesHolder
• StructurePreparationSettings() : Scine::StructurePreparation::StructurePreparationSettings
• StructureProcessor() : Scine::StructurePreparation::StructureProcessor
• SubsystemGenerator() : Scine::SwooseUtilities::SubsystemGenerator
• supportsMethodFamily() : Scine::Qmmm::QmmmCalculator , Scine::Swoose::MockQmCalculator , Scine::MolecularMechanics::MolecularMechanicsCalculator