VizChemoton

VizChemoton allows the visualization of chemical reaction networks (CRNs) constructed by Chemoton through the generation of standalone HTML files with amk-tools, allowing the user to easily interact with the network just via browser.

Note

If you use VizChemoton, please cite it as follows:

Enric Petrus, Diego Garay-Ruiz, Carles Bo, Markus Reiher, Thomas B. Hofstetter. VizChemoton 1.0.0, Zenodo (2025) DOI: 10.5281/zenodo.14803803

The image above shows which type of visualization (network on the left, structure on the right) the HTML file permits

Below we depict the table of contents of this documentation.

• General introduction
  • Chemoton
  • amk-tools
  • VizChemoton
• Installation
• Input file
  • 1. Database
  • 2. Method
  • 3. Files
    • pathfinder
    • reactions
    • compounds
  • 4. Settings
  • 5. Output
• Example
• Changelog
  • Release 1.0.0
    • Initial Features